Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015818917.1_cds_XP_016499831.1_13714
CDS Infomation

[gene=LOC107818346] [db_xref=GeneID:107818346] [protein=CDK5RAP1-like protein] [protein_id=XP_016499831.1] [location=complement(join(42862..43370,43840..44897,55837..56153))] [gbkey=CDS]
Sequence

ATGGCGTCGTCTCTATCTTCTCTATCGACTATATTGAGCCAGCCTCACTGCGCTATACGC
ATCAAATTCCCCAAACAGTACACTTCCTTCCACGTCAGATTCCTCTCCTCTAAGCTTCAC
CAACATCAATCCTCCTCCTGCCGCCGCACGTCAGCCGCTCTTCGAAGGAGCTCGACATTC
TCTCTCAAGATTTCCAGAAACTTCTCCAACTGTCAATCTCGCTCTTCCTTACCCAGCAAG
GACCAAATTCCAAGCCTCCACCACTTCATTCCCAAAGCTACTGCTCCCACTGTTTCTGCT
TCCGATGTTCAATCCGAGCCTGTGATGATATCTGATGCTATGCCAAGAGGTCGCATCTAT
CATGAAACTTATGGATGCCAAATGAATGTCAATGATATGGAGATTGTTTTATCTATCATG
AAAAATGCTGGATACACTGAAAGCGTGGAAGTCCCAGAGAATGCTGAGATAATATTTATA
AATACTTGTGCTATAAGGGACAATGCAGAACATAAGGTCTGGCAGAGGCTCAATTATTTT
TGGTTTCTTAAGAGACAATGGAAGAGCAATGTTGCGATTGGAAGGTCACAGTCCACCCAT
CCTCCCAAAGTAGTTGTGCTGGGGTGTATGGCCGAGAGGTTGAAGGACAAAATATTGGAT
TCAGATAAGATGGTTGACGTGGTTTGTGGACCTGATGCTTATCGAGACTTGCCACGCCTG
TTGGAAGAGGTGGACTATGGTCAAAAAGGTATCAATACTCTACTTTCTCTTGAAGAAACT
TATGCGGATATTAATCCAGTTCGCATCTCCAAAAATTCTATATCTGCATTTGTATCTGTG
ATGAGGGGTTGCAATAATATGTGCTCATTCTGCATTGTTCCCTTCACTAGAGGGAGAGAA
CGGTCTCGCCCAGTGGAATCAATTGTGAAAGAGGTCGCTGAACTTTGGAAAGAGGGAGTC
AAAGAGGTTACACTTCTTGGCCAGAATGTAAATAGCTATAATGATACATCTGGAGTTGAA
AATCCGGCTGAACCAGCAGTCAGTTGGGAACTTAGTGATGGATTCTCTAGCATGTGCAAA
GTAAAACATGTGGGTCTACGGTTTGCTGATCTCCTAGATAGACTTGCGACAGAATTTCCT
GAAATGCGGTTCAGATATACTTCCCCACATCCTAAAGATTTTCCAGATGATTTGCTGTAC
GTAATGCGCGACAGGTACAATATCTGCAAAAGCATTCATCTGCCAGCACAGTCAGGCAGC
AGTGCCGTGCTTGAAAGGATGCGTCGTGGATATACTCGAGAAGCATACTTAGATCTTGTG
AAGAAGATAAGAGATATAATACCTGACATGGGCATAAGCAGTGACTTCATATGTGGTTTC
TGTGGAGAAACGGAAGAGGATCACGAAGACACACTAAGCCTCGTAAAGGCTGTTTGTTAT
GATATGGCATACATGTTTGCTTACAGCATGAGAGAGAAAACACATGCCCACCGAAAATAT
GTTGATGATGTTCCTGATGATGTCAAGCAAAGGAGGCTCACAGAATTAATTGAGGCTTTT
CGTGGGAGTACAGGTCAGAACTATGACTCTAAAATTGGCACTCTCCAACTTGTGTTAGTT
GAAGGGCCCAATAAGAGAGCCCCAGACACAGAGTTAATTGGCAAGAGCGACAGAGGCCAT
AGGGTATCATTTACTAACCTGCCTATCCCAGATAAGGTTGATAATAATGGGAAGCGAAAC
CCAAAGATTGGTGATTATGTTGAAGTGCACATAACAAAATCTACAAGGGCATCACTGTTT
GGAGAAGCACTTGCTATAACTAAATTGAGCTCATTCTACAGCTCTTCACATGAAGAAGCT
GTTGCGTTTGCCAGCAGAACTTAA

Peptide Sequence

PEP ID

XP_016499831.1
PEP Infomation

PREDICTED: CDK5RAP1-like protein [Nicotiana tabacum]
Sequence

MASSLSSLSTILSQPHCAIRIKFPKQYTSFHVRFLSSKLHQHQSSSCRRTSAALRRSSTF
SLKISRNFSNCQSRSSLPSKDQIPSLHHFIPKATAPTVSASDVQSEPVMISDAMPRGRIY
HETYGCQMNVNDMEIVLSIMKNAGYTESVEVPENAEIIFINTCAIRDNAEHKVWQRLNYF
WFLKRQWKSNVAIGRSQSTHPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDLPRL
LEEVDYGQKGINTLLSLEETYADINPVRISKNSISAFVSVMRGCNNMCSFCIVPFTRGRE
RSRPVESIVKEVAELWKEGVKEVTLLGQNVNSYNDTSGVENPAEPAVSWELSDGFSSMCK
VKHVGLRFADLLDRLATEFPEMRFRYTSPHPKDFPDDLLYVMRDRYNICKSIHLPAQSGS
SAVLERMRRGYTREAYLDLVKKIRDIIPDMGISSDFICGFCGETEEDHEDTLSLVKAVCY
DMAYMFAYSMREKTHAHRKYVDDVPDDVKQRRLTELIEAFRGSTGQNYDSKIGTLQLVLV
EGPNKRAPDTELIGKSDRGHRVSFTNLPIPDKVDNNGKRNPKIGDYVEVHITKSTRASLF
GEALAITKLSSFYSSSHEEAVAFASRT

Transcript Sequence

Gene sequence data has not been registered.